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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037387 through 18771 annotations produced 1 hits



(CG1213):

Annotation Number : CG1213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037387
Gbrowse : chr3R:1666907-1672300 (+) // 100.0 //
Probeset : 1633086_s_at
Accessions : protein= NP_649599; /// NP_731020;, nucleotide= NM_141342; /// NM_169113;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter
FlyMine data for FBgn0037387.
BDGP gene expression has embryonic in situ data for CG1213: 4 pix of staining in 1 body parts.
Homophila reports that CG1213 is a close match (2e-23) to human gene SLC2A4;GLUT4 (NP_001033), a gene associated with {Diabetes mellitus, noninsulin-dependent} (3).
BioGrid reports that CG1213 interacts with CG3164 .
VDRC has 2 RNAi stocks for FBgn0037387 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 ± 64 of 4 0.50Down
Head876 ± 884 of 4 2.40Up
Eye346 ± 504 of 4 0.95None
Thoracicoabdominal ganglion313 ± 134 of 4 0.90None
Salivary gland10925 ± 3704 of 430.03Up
Crop3911 ± 1154 of 410.80Up
Midgut2142 ± 534 of 4 5.90Up
Tubule42 ± 142 of 4 0.10Down
Hindgut119 ± 94 of 4 0.30Down
Heart1627 ± 1424 of 4 4.47Up
Fat body1890 ± 1534 of 4 5.20Up
Ovary1 ± 00 of 4 0.00Down
Testis11 ± 22 of 4 0.00Down
Male accessory glands13 ± 20 of 4 0.00Down
Virgin spermatheca2464 ± 324 of 4 6.77Up
Mated spermatheca1799 ± 1064 of 4 4.95Up
Adult carcass1581 ± 624 of 4 4.30Up
Larval CNS51 ± 74 of 4 0.14Down
Larval Salivary gland101 ± 54 of 4 0.28Down
Larval midgut152 ± 104 of 4 0.42Down
Larval tubule22 ± 14 of 4 0.10Down
Larval hindgut222 ± 44 of 4 0.61None
Larval fat body23 ± 42 of 4 0.10Down
Larval trachea40 ± 164 of 4 0.11Down
Larval carcass140 ± 783 of 4 0.39None
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly363 ± 454 of 4

Looking for FBgn0037387. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime