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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037389 through 18771 annotations produced 1 hits



(CG10991):

Annotation Number : CG10991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037389
Gbrowse : chr3R:1674674-1675175 (+) // 100.0 //
Probeset : 1623146_at
Accessions : protein= NP_649601;, nucleotide= NM_141344;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0037389.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.40Down
Head8 00 of 4 0.50None
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion7 00 of 4 0.40None
Salivary gland12 50 of 4 0.70None
Crop10 10 of 4 0.60None
Midgut9 20 of 4 0.50None
Tubule3 00 of 4 0.20Down
Hindgut6 10 of 4 0.40Down
Heart4 10 of 4 0.26Down
Fat body8 40 of 4 0.46None
Ovary9 10 of 4 0.50None
Testis52 74 of 4 2.80Up
Male accessory glands15 30 of 4 0.80None
Virgin spermatheca3 00 of 4 0.17Down
Mated spermatheca3 00 of 4 0.17Down
Adult carcass10 30 of 4 0.60None
Larval CNS7 20 of 4 0.39None
Larval Salivary gland6 10 of 4 0.36Down
Larval midgut5 20 of 4 0.27Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut11 00 of 4 0.61None
Larval fat body22 42 of 4 1.20None
Larval trachea2 10 of 4 0.16Down
Larval carcass7 10 of 4 0.43None
S2 cells (growing)3 10 of 4 0.17Down
Whole fly18 32 of 4

Looking for FBgn0037389. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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