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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037397 through 18771 annotations produced 1 hits



(CG1075):

Annotation Number : CG1075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037397
Gbrowse : chr3R:1853488-1854480 (+) // 100.0 //
Probeset : 1625823_at
Accessions : protein= NP_649609;, nucleotide= NM_141352;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0008234 // cystei
FlyMine data for FBgn0037397.
Homophila reports that CG1075 is a close match (4e-16) to human gene CPPI;CTSC;HMS;JPD;PALS;PLS (NP_001805), a gene associated with Haim-Munk syndrome, 245010 (3);Papillon-Lefevre syndrome, 245000 (3);Periodontitis, juvenile, 170650 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.90None
Head5 ± 10 of 4 0.90None
Eye5 ± 10 of 4 0.95None
Thoracicoabdominal ganglion11 ± 21 of 4 2.00None
Salivary gland16 ± 40 of 4 2.74None
Crop2 ± 00 of 4 0.50None
Midgut10 ± 20 of 4 1.70None
Tubule6 ± 10 of 4 1.00None
Hindgut6 ± 11 of 4 1.10None
Heart6 ± 10 of 4 1.16None
Fat body12 ± 61 of 4 2.08None
Ovary5 ± 00 of 4 0.90None
Testis5 ± 10 of 4 0.90None
Male accessory glands6 ± 20 of 4 1.10None
Virgin spermatheca8 ± 20 of 4 1.43None
Mated spermatheca7 ± 20 of 4 1.28None
Adult carcass13 ± 40 of 4 2.20None
Larval CNS5 ± 30 of 4 0.95None
Larval Salivary gland7 ± 20 of 4 1.27None
Larval midgut8 ± 10 of 4 1.40None
Larval tubule4 ± 20 of 4 0.80None
Larval hindgut5 ± 00 of 4 0.93None
Larval fat body20 ± 30 of 4 3.50Up
Larval trachea5 ± 10 of 4 0.93None
Larval carcass5 ± 10 of 4 0.98None
S2 cells (growing)8 ± 11 of 4 1.44None
Whole fly5 ± 10 of 4

Looking for FBgn0037397. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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