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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037398 through 18771 annotations produced 1 hits



(CG15580):

Annotation Number : CG15580
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037398
Gbrowse : chr3R:1880431-1883259 (-) // 100.0 //
Probeset : 1632102_a_at
Accessions : protein= NP_649610; /// NP_731040;, nucleotide= NM_141353; /// NM_169124;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037398.
BioGrid reports that CG15580 interacts with CG5848 CG17050 CG18362 CG2199 CG31637 CG3213 CG3773 CG4533 CG5062 CG5134 CG5272 CG8383 .
VDRC has 1 RNAi stocks for FBgn0037398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.20Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland15 ± 30 of 4 0.61Down
Crop2 ± 00 of 4 0.10Down
Midgut6 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut5 ± 20 of 4 0.20Down
Heart1 ± 00 of 4 0.04Down
Fat body8 ± 40 of 4 0.34Down
Ovary6 ± 00 of 4 0.30Down
Testis424 ± 74 of 416.80Up
Male accessory glands5 ± 20 of 4 0.20Down
Virgin spermatheca2 ± 00 of 4 0.09Down
Mated spermatheca4 ± 10 of 4 0.16Down
Adult carcass5 ± 10 of 4 0.20Down
Larval CNS4 ± 00 of 4 0.18Down
Larval Salivary gland17 ± 41 of 4 0.71None
Larval midgut9 ± 20 of 4 0.37Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut5 ± 10 of 4 0.20Down
Larval fat body58 ± 273 of 4 2.30None
Larval trachea2 ± 30 of 4 0.10Down
Larval carcass3 ± 10 of 4 0.14Down
S2 cells (growing)5 ± 00 of 4 0.21Down
Whole fly25 ± 24 of 4

Looking for FBgn0037398. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime