Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037402 through 18771 annotations produced 1 hits



Vacuolar H[+] ATPase subunit 14-2 (Vha14-2):

Annotation Number : CG1076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037402
Gbrowse : chr3R:1948380-1949143 (+) // 100.0 //
Probeset : 1640404_at
Accessions : protein= NP_649614;, nucleotide= NM_141357;
Pathway : "0000221 // vacuolar proton-transporting V-type ATPase
Interpro : V1 domain // inferred from sequence or structural similarity /// 0000221 // vacuolar proton-transporting V-type ATPase
FlyMine data for FBgn0037402.
VDRC has 3 RNAi stocks for FBgn0037402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland7 ± 21 of 4 0.30Down
Crop5 ± 10 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.16Down
Fat body5 ± 10 of 4 0.24Down
Ovary0 ± 00 of 4 0.00Down
Testis245 ± 84 of 410.30Up
Male accessory glands1 ± 10 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.23Down
Mated spermatheca7 ± 10 of 4 0.30Down
Adult carcass7 ± 10 of 4 0.30Down
Larval CNS1 ± 10 of 4 0.08Down
Larval Salivary gland1 ± 10 of 4 0.07Down
Larval midgut2 ± 10 of 4 0.11Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body27 ± 111 of 4 1.10None
Larval trachea4 ± 11 of 4 0.20Down
Larval carcass2 ± 00 of 4 0.10Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly23 ± 34 of 4

Looking for FBgn0037402. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime