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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037408 through 18771 annotations produced 1 hits

neuropeptide F receptor (NPFR1):

Annotation Number : CG1147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037408
Gbrowse : chr3R:2013121-2021136 (+) // 100.0 //
Probeset : 1628982_at
Accessions : protein= NP_524245;, nucleotide= NM_079521;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0037408.
BDGP gene expression has embryonic in situ data for NPFR1: 6 pix of staining in 6 body parts.
Homophila reports that CG1147 is a close match (9e-11) to human gene CCR2;CMKBR2 (NP_000639), a gene associated with {HIV infection, susceptibility/resistance to} (3).
TRiP has 1 RNAi stocks for FBgn0037408 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037408 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 34 of 4 9.70Up
Head19 14 of 4 2.20Up
Eye9 12 of 4 1.05None
Thoracicoabdominal ganglion66 44 of 4 7.50Up
Salivary gland14 30 of 4 1.61None
Crop36 34 of 4 4.10Up
Midgut21 24 of 4 2.40Up
Tubule108 364 of 412.20Up
Hindgut11 04 of 4 1.30Up
Heart3 01 of 4 0.45Down
Fat body7 13 of 4 0.82None
Ovary3 12 of 4 0.40Down
Testis14 04 of 4 1.60Up
Male accessory glands7 10 of 4 0.90None
Virgin spermatheca9 03 of 4 1.10None
Mated spermatheca10 03 of 4 1.18None
Adult carcass8 42 of 4 1.00None
Larval CNS68 24 of 4 7.74Up
Larval Salivary gland6 22 of 4 0.69None
Larval midgut10 04 of 4 1.18None
Larval tubule45 44 of 4 5.10Up
Larval hindgut6 03 of 4 0.67Down
Larval fat body10 12 of 4 1.20None
Larval trachea5 22 of 4 0.63None
Larval carcass8 13 of 4 0.93None
S2 cells (growing)4 12 of 4 0.55Down
Whole fly8 04 of 4

Looking for FBgn0037408. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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