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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037410 through 18771 annotations produced 1 hits



Osiris (Osi2):

Annotation Number : CG1148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037410
Gbrowse : chr3R:2036720-2039210 (+) // 99.72 //
Probeset : 1625965_a_at
Accessions : protein= NP_649621; /// NP_731052;, nucleotide= NM_141364; /// NM_169130;
FlyMine data for FBgn0037410.
BDGP gene expression has embryonic in situ data for CG1148: 15 pix of staining in 10 body parts.
VDRC has 2 RNAi stocks for FBgn0037410 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head52 ± 24 of 4 4.80Up
Eye172 ± 254 of 415.90Up
Thoracicoabdominal ganglion18 ± 11 of 4 1.70Up
Salivary gland11 ± 50 of 4 1.09None
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.20Down
Hindgut2 ± 10 of 4 0.20Down
Heart1 ± 10 of 4 0.15Down
Fat body2 ± 00 of 4 0.24Down
Ovary3 ± 10 of 4 0.40Down
Testis24 ± 14 of 4 2.20Up
Male accessory glands4 ± 10 of 4 0.40None
Virgin spermatheca1 ± 00 of 4 0.16Down
Mated spermatheca4 ± 10 of 4 0.37None
Adult carcass5 ± 20 of 4 0.50None
Larval CNS1 ± 10 of 4 0.17Down
Larval Salivary gland3 ± 20 of 4 0.34None
Larval midgut3 ± 00 of 4 0.28Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut8 ± 20 of 4 0.79None
Larval fat body7 ± 10 of 4 0.60None
Larval trachea17 ± 62 of 4 1.57None
Larval carcass53 ± 44 of 4 4.91Up
S2 cells (growing)1 ± 00 of 4 0.17Down
Whole fly10 ± 20 of 4

Looking for FBgn0037410. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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