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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037411 through 18771 annotations produced 1 hits

Osiris (Osi3):

Annotation Number : CG1150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037411
Gbrowse : chr3R:2041557-2043675 (+) // 100.0 //
Probeset : 1629522_at
Accessions : protein= NP_649622;, nucleotide= NM_141365;
FlyMine data for FBgn0037411.
BDGP gene expression has embryonic in situ data for CG1150: 10 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0037411 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 1.20None
Head5 10 of 4 1.10None
Eye4 00 of 4 0.90None
Thoracicoabdominal ganglion8 20 of 4 1.80None
Salivary gland5 10 of 4 1.18None
Crop9 21 of 4 2.00None
Midgut8 21 of 4 1.80None
Tubule7 00 of 4 1.40Up
Hindgut6 10 of 4 1.20None
Heart2 00 of 4 0.61None
Fat body4 10 of 4 0.88None
Ovary2 00 of 4 0.40None
Testis3 10 of 4 0.70None
Male accessory glands11 20 of 4 2.30None
Virgin spermatheca5 20 of 4 1.16None
Mated spermatheca10 20 of 4 2.09None
Adult carcass7 10 of 4 1.50None
Larval CNS5 12 of 4 1.22None
Larval Salivary gland11 31 of 4 2.35None
Larval midgut6 10 of 4 1.38None
Larval tubule5 10 of 4 1.00None
Larval hindgut6 11 of 4 1.29None
Larval fat body11 30 of 4 2.40None
Larval trachea3 10 of 4 0.76None
Larval carcass10 20 of 4 2.20None
S2 cells (growing)10 02 of 4 2.12Up
Whole fly4 10 of 4

Looking for FBgn0037411. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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