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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037413 through 18771 annotations produced 1 hits



Osiris (Osi5):

Annotation Number : CG15590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037413
Gbrowse : chr3R:2053427-2054461 (+) // 100.0 //
Probeset : 1635991_at
Accessions : protein= NP_649624;, nucleotide= NM_141367;
FlyMine data for FBgn0037413.
VDRC has 2 RNAi stocks for FBgn0037413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head6 10 of 4 2.40None
Eye2 10 of 4 1.16None
Thoracicoabdominal ganglion0 00 of 4 0.20None
Salivary gland5 30 of 4 2.15None
Crop1 00 of 4 0.50None
Midgut3 10 of 4 1.30None
Tubule1 00 of 4 0.80None
Hindgut1 00 of 4 0.70None
Heart2 10 of 4 0.88None
Fat body4 20 of 4 1.68None
Ovary0 00 of 4 0.30None
Testis20 04 of 4 8.10Up
Male accessory glands0 00 of 4 0.30None
Virgin spermatheca11 00 of 4 4.62Up
Mated spermatheca13 50 of 4 5.23None
Adult carcass2 10 of 4 1.20None
Larval CNS4 20 of 4 1.83None
Larval Salivary gland1 00 of 4 0.50None
Larval midgut4 10 of 4 1.66None
Larval tubule0 00 of 4 0.30None
Larval hindgut1 00 of 4 0.68None
Larval fat body3 10 of 4 1.20None
Larval trachea0 00 of 4 0.32None
Larval carcass1 00 of 4 0.51None
S2 cells (growing)0 00 of 4 0.24None
Whole fly2 10 of 4

Looking for FBgn0037413. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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