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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037418 through 18771 annotations produced 1 hits

Osiris (Osi11):

Annotation Number : CG15596
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037418
Gbrowse : chr3R:2093501-2094410 (-) // 100.0 //
Probeset : 1633551_at
Accessions : protein= NP_649630;, nucleotide= NM_141373;
FlyMine data for FBgn0037418.
VDRC has 6 RNAi stocks for FBgn0037418 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 2.10None
Head2 00 of 4 1.00None
Eye0 00 of 4 0.42None
Thoracicoabdominal ganglion3 10 of 4 1.90None
Salivary gland9 40 of 4 4.66None
Crop2 00 of 4 1.00None
Midgut1 00 of 4 0.60None
Tubule3 00 of 4 1.70Up
Hindgut2 10 of 4 1.40None
Heart0 00 of 4 0.32None
Fat body4 30 of 4 2.48None
Ovary2 00 of 4 1.20None
Testis4 10 of 4 2.30None
Male accessory glands5 20 of 4 2.90None
Virgin spermatheca1 00 of 4 0.61None
Mated spermatheca2 00 of 4 1.13None
Adult carcass5 20 of 4 3.10None
Larval CNS2 10 of 4 1.27None
Larval Salivary gland2 00 of 4 1.29None
Larval midgut1 00 of 4 0.58None
Larval tubule1 00 of 4 0.90None
Larval hindgut1 00 of 4 0.71None
Larval fat body2 00 of 4 1.20None
Larval trachea1 00 of 4 0.52None
Larval carcass2 00 of 4 1.22None
S2 cells (growing)2 10 of 4 1.31None
Whole fly1 00 of 4

Looking for FBgn0037418. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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