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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037419 through 18771 annotations produced 1 hits

Osiris (Osi12):

Annotation Number : CG1154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037419
Gbrowse : chr3R:2104252-2108217 (+) // 100.0 //
Probeset : 1632664_at
Accessions : protein= NP_649631;, nucleotide= NM_141374;
FlyMine data for FBgn0037419.
BDGP gene expression has embryonic in situ data for CG1154: 24 pix of staining in 6 body parts.
VDRC has 1 RNAi stocks for FBgn0037419 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30Down
Head5 11 of 4 0.60None
Eye2 10 of 4 0.25Down
Thoracicoabdominal ganglion1 11 of 4 0.20Down
Salivary gland14 11 of 4 1.45None
Crop9 23 of 4 1.00None
Midgut10 11 of 4 1.10None
Tubule7 02 of 4 0.70Down
Hindgut6 12 of 4 0.70None
Heart3 00 of 4 0.37Down
Fat body14 24 of 4 1.42None
Ovary2 00 of 4 0.30Down
Testis32 14 of 4 3.30Up
Male accessory glands8 41 of 4 0.80None
Virgin spermatheca10 04 of 4 1.03None
Mated spermatheca11 24 of 4 1.15None
Adult carcass7 22 of 4 0.80None
Larval CNS9 44 of 4 1.01None
Larval Salivary gland6 00 of 4 0.65None
Larval midgut7 00 of 4 0.78None
Larval tubule7 02 of 4 0.70None
Larval hindgut4 13 of 4 0.46Down
Larval fat body11 02 of 4 1.20None
Larval trachea4 33 of 4 0.42Down
Larval carcass5 12 of 4 0.57None
S2 cells (growing)2 00 of 4 0.22Down
Whole fly9 13 of 4

Looking for FBgn0037419. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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