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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037420 through 18771 annotations produced 1 hits


Annotation Number : CG15597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037420
Gbrowse : chr3R:2110372-2110976 (-) // 100.0 //
Probeset : 1628810_at
Accessions : protein= NP_649632;, nucleotide= NM_141375;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037420.
BioGrid reports that CG15597 interacts with CG17271 .
VDRC has 1 RNAi stocks for FBgn0037420 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 2.40None
Head3 00 of 4 2.40None
Eye4 10 of 4 2.89None
Thoracicoabdominal ganglion4 10 of 4 3.20Up
Salivary gland8 20 of 4 6.00None
Crop4 00 of 4 3.20Up
Midgut3 10 of 4 2.70None
Tubule2 00 of 4 1.80Up
Hindgut4 10 of 4 2.90None
Heart1 00 of 4 1.12None
Fat body16 40 of 411.33Up
Ovary2 10 of 4 1.40None
Testis5 11 of 4 3.70Up
Male accessory glands8 20 of 4 5.80None
Virgin spermatheca6 00 of 4 4.53Up
Mated spermatheca4 10 of 4 3.16None
Adult carcass17 50 of 412.40None
Larval CNS5 41 of 4 4.09None
Larval Salivary gland6 20 of 4 4.21None
Larval midgut5 00 of 4 3.82Up
Larval tubule2 00 of 4 1.70None
Larval hindgut15 24 of 410.79Up
Larval fat body10 21 of 4 7.20Up
Larval trachea53 94 of 437.25Up
Larval carcass313 804 of 4219.77Up
S2 cells (growing)3 10 of 4 2.61None
Whole fly1 00 of 4

Looking for FBgn0037420. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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