FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037421 through 18771 annotations produced 2 hits

(CG15594):

Annotation Number : CG15594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037421
Gbrowse : chr3R:2113456-2116719 (+) // 100.0 //
Probeset : 1638817_at
Accessions : protein= NP_649633; /// NP_731062;, nucleotide= NM_141376; /// NM_169132;
FlyMine data for FBgn0037421.
BDGP gene expression has embryonic in situ data for CG15594: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0037421 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	1.10	None
Head	4 ± 1	0 of 4	1.70	None
Eye	2 ± 0	0 of 4	0.83	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.90	None
Salivary gland	7 ± 1	0 of 4	2.78	None
Crop	3 ± 0	0 of 4	1.30	None
Midgut	2 ± 1	0 of 4	0.80	None
Tubule	4 ± 0	0 of 4	1.70	Up
Hindgut	4 ± 2	0 of 4	1.40	None
Heart	3 ± 1	1 of 4	1.26	None
Fat body	8 ± 0	1 of 4	2.87	None
Ovary	4 ± 1	1 of 4	1.40	None
Testis	2 ± 0	0 of 4	0.90	None
Male accessory glands	6 ± 1	0 of 4	2.40	None
Virgin spermatheca	4 ± 1	0 of 4	1.61	None
Mated spermatheca	9 ± 2	0 of 4	3.29	None
Adult carcass	8 ± 1	0 of 4	3.10	Up
Larval CNS	3 ± 0	0 of 4	1.07	None
Larval Salivary gland	3 ± 1	0 of 4	1.38	None
Larval midgut	2 ± 0	0 of 4	0.75	None
Larval tubule	3 ± 0	0 of 4	1.10	None
Larval hindgut	3 ± 0	0 of 4	1.18	None
Larval fat body	2 ± 1	0 of 4	0.90	None
Larval trachea	1 ± 1	0 of 4	0.51	None
Larval carcass	6 ± 2	1 of 4	2.44	None
S2 cells (growing)	3 ± 1	0 of 4	1.11	None
Whole fly	2 ± 1	0 of 4

(CG15594):

Annotation Number : CG15594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037421
Gbrowse : chr3R:2113588-2115198 (+) // 100.0 //
Probeset : 1624687_a_at
Accessions : protein= NP_649633; /// NP_731062;, nucleotide= NM_141376; /// NM_169132;
FlyMine data for FBgn0037421.
BDGP gene expression has embryonic in situ data for CG15594: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0037421 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.40	None
Head	2 ± 0	0 of 4	0.40	None
Eye	1 ± 0	0 of 4	0.23	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.80	None
Salivary gland	2 ± 0	0 of 4	0.40	None
Crop	4 ± 2	0 of 4	0.80	None
Midgut	6 ± 1	0 of 4	1.20	None
Tubule	3 ± 0	0 of 4	0.60	Down
Hindgut	6 ± 3	0 of 4	1.30	None
Heart	1 ± 0	0 of 4	0.36	None
Fat body	3 ± 2	0 of 4	0.58	None
Ovary	3 ± 1	0 of 4	0.60	None
Testis	3 ± 1	0 of 4	0.70	None
Male accessory glands	5 ± 1	0 of 4	1.00	None
Virgin spermatheca	4 ± 2	0 of 4	0.83	None
Mated spermatheca	4 ± 2	0 of 4	0.91	None
Adult carcass	5 ± 1	0 of 4	1.00	None
Larval CNS	2 ± 3	0 of 4	0.51	None
Larval Salivary gland	11 ± 4	0 of 4	2.13	None
Larval midgut	5 ± 2	0 of 4	0.96	None
Larval tubule	7 ± 3	0 of 4	1.30	None
Larval hindgut	5 ± 1	0 of 4	1.01	None
Larval fat body	6 ± 4	0 of 4	1.10	None
Larval trachea	1 ± 0	0 of 4	0.22	None
Larval carcass	4 ± 0	0 of 4	0.79	None
S2 cells (growing)	9 ± 0	0 of 4	1.83	None
Whole fly	5 ± 1	0 of 4

Looking for FBgn0037421. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720