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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037422 through 18771 annotations produced 1 hits



Osiris (Osi13):

Annotation Number : CG15595
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037422
Gbrowse : chr3R:2117623-2118491 (+) // 100.0 //
Probeset : 1636597_at
Accessions : protein= NP_649634;, nucleotide= NM_141377;
FlyMine data for FBgn0037422.
VDRC has 3 RNAi stocks for FBgn0037422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head5 ± 10 of 4 0.80None
Eye4 ± 00 of 4 0.62None
Thoracicoabdominal ganglion6 ± 11 of 4 1.00None
Salivary gland14 ± 50 of 4 2.09None
Crop7 ± 20 of 4 1.00None
Midgut6 ± 10 of 4 0.90None
Tubule3 ± 00 of 4 0.50Down
Hindgut5 ± 10 of 4 0.70None
Heart3 ± 11 of 4 0.50None
Fat body7 ± 20 of 4 1.02None
Ovary2 ± 00 of 4 0.30Down
Testis8 ± 12 of 4 1.20None
Male accessory glands251 ± 114 of 436.10Up
Virgin spermatheca6 ± 10 of 4 0.90None
Mated spermatheca5 ± 10 of 4 0.81None
Adult carcass7 ± 10 of 4 1.10None
Larval CNS1 ± 10 of 4 0.20Down
Larval Salivary gland1 ± 00 of 4 0.15Down
Larval midgut8 ± 01 of 4 1.16None
Larval tubule4 ± 10 of 4 0.60None
Larval hindgut5 ± 10 of 4 0.82None
Larval fat body7 ± 20 of 4 1.10None
Larval trachea0 ± 00 of 4 0.13Down
Larval carcass4 ± 10 of 4 0.65None
S2 cells (growing)3 ± 00 of 4 0.46Down
Whole fly7 ± 11 of 4

Looking for FBgn0037422. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime