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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037424 through 18771 annotations produced 1 hits

Osiris (Osi15):

Annotation Number : CG1157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037424
Gbrowse : chr3R:2127527-2129375 (+) // 100.0 //
Probeset : 1638376_at
Accessions : protein= NP_649636;, nucleotide= NM_141379;
FlyMine data for FBgn0037424.
BDGP gene expression has embryonic in situ data for CG1157: 19 pix of staining in 2 body parts.
BioGrid reports that CG1157 interacts with CG13022 CG33017 CG6864 CG11719 CG18396 .
VDRC has 1 RNAi stocks for FBgn0037424 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00None
Head0 00 of 4 0.00None
Eye0 00 of 4 0.01None
Thoracicoabdominal ganglion1 10 of 4 0.10None
Salivary gland12 40 of 4 0.38None
Crop12 30 of 4 0.40None
Midgut0 00 of 4 0.00None
Tubule3 00 of 4 0.10Down
Hindgut2 10 of 4 0.10None
Heart3 10 of 4 0.12None
Fat body15 40 of 4 0.46None
Ovary0 00 of 4 0.00None
Testis1 00 of 4 0.00None
Male accessory glands5 20 of 4 0.20None
Virgin spermatheca11 10 of 4 0.35None
Mated spermatheca11 10 of 4 0.35None
Adult carcass1 00 of 4 0.00None
Larval CNS4 10 of 4 0.13None
Larval Salivary gland5 10 of 4 0.16None
Larval midgut16 20 of 4 0.48None
Larval tubule3 10 of 4 0.10None
Larval hindgut7 20 of 4 0.22None
Larval fat body2 00 of 4 0.10None
Larval trachea61 94 of 4 1.83None
Larval carcass10 20 of 4 0.32None
S2 cells (growing)0 00 of 4 0.03None
Whole fly33 133 of 4

Looking for FBgn0037424. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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