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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037439 through 18771 annotations produced 1 hits



(CG10286):

Annotation Number : CG10286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037439
Gbrowse : chr3R:2194675-2196837 (+) // 100.0 //
Probeset : 1640068_at
Accessions : protein= NP_649649;, nucleotide= NM_141392;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0037439.
BDGP gene expression has embryonic in situ data for CG10286: 15 pix of staining in 15 body parts.
VDRC has 3 RNAi stocks for FBgn0037439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 ± 14 of 4 0.30Down
Head67 ± 54 of 4 0.50Down
Eye63 ± 24 of 4 0.46Down
Thoracicoabdominal ganglion78 ± 34 of 4 0.60Down
Salivary gland74 ± 54 of 4 0.54Down
Crop78 ± 14 of 4 0.60Down
Midgut67 ± 44 of 4 0.50Down
Tubule78 ± 64 of 4 0.60Down
Hindgut63 ± 24 of 4 0.50Down
Heart74 ± 44 of 4 0.54Down
Fat body96 ± 84 of 4 0.70Down
Ovary254 ± 84 of 4 1.80Up
Testis31 ± 24 of 4 0.20Down
Male accessory glands167 ± 154 of 4 1.20None
Virgin spermatheca214 ± 104 of 4 1.55Up
Mated spermatheca274 ± 144 of 4 1.98Up
Adult carcass72 ± 54 of 4 0.50Down
Larval CNS233 ± 104 of 4 1.69Up
Larval Salivary gland188 ± 164 of 4 1.36None
Larval midgut75 ± 34 of 4 0.54Down
Larval tubule53 ± 34 of 4 0.40Down
Larval hindgut112 ± 134 of 4 0.82None
Larval fat body62 ± 54 of 4 0.50Down
Larval trachea215 ± 334 of 4 1.56Up
Larval carcass147 ± 224 of 4 1.06None
S2 cells (growing)184 ± 24 of 4 1.33Up
Whole fly138 ± 104 of 4

Looking for FBgn0037439. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime