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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037442 through 18771 annotations produced 1 hits



(CG10277):

Annotation Number : CG10277
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037442
Gbrowse : chr3R:2208632-2214026 (+) // 100.0 //
Probeset : 1633069_s_at
Accessions : protein= NP_001097695; /// NP_649653; /// NP_731079; /// NP_731080;, nucleotide= NM_001104225; /// NM_141396; /// NM_169139; /// NM_169140;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0037442.
Homophila reports that CG10277 is a close match (9e-11) to human gene RNF6 (NP_898865), a gene associated with Esophageal carcinoma, somatic, 133239 (3).
BioGrid reports that CG10277 interacts with CG10694 .
VDRC has 2 RNAi stocks for FBgn0037442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain335 ± 154 of 4 3.20Up
Head217 ± 174 of 4 2.10Up
Eye205 ± 34 of 4 1.94Up
Thoracicoabdominal ganglion285 ± 94 of 4 2.70Up
Salivary gland224 ± 244 of 4 2.12Up
Crop279 ± 64 of 4 2.60Up
Midgut177 ± 54 of 4 1.70Up
Tubule109 ± 24 of 4 1.00None
Hindgut146 ± 74 of 4 1.40None
Heart246 ± 184 of 4 2.33Up
Fat body414 ± 304 of 4 3.91Up
Ovary135 ± 24 of 4 1.30None
Testis88 ± 54 of 4 0.80None
Male accessory glands191 ± 54 of 4 1.80Up
Virgin spermatheca284 ± 234 of 4 2.68Up
Mated spermatheca254 ± 254 of 4 2.41Up
Adult carcass176 ± 114 of 4 1.70Up
Larval CNS298 ± 294 of 4 2.82Up
Larval Salivary gland147 ± 134 of 4 1.39None
Larval midgut268 ± 294 of 4 2.53Up
Larval tubule367 ± 264 of 4 3.50Up
Larval hindgut199 ± 144 of 4 1.88Up
Larval fat body292 ± 294 of 4 2.80Up
Larval trachea102 ± 124 of 4 0.97None
Larval carcass162 ± 124 of 4 1.53Up
S2 cells (growing)169 ± 94 of 4 1.60Up
Whole fly105 ± 164 of 4

Looking for FBgn0037442. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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