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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037443 through 18771 annotations produced 1 hits



(CG1021):

Annotation Number : CG1021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037443
Gbrowse : chr3R:2214880-2231613 (-) // 100.0 //
Probeset : 1629077_s_at
Accessions : protein= NP_001138015; /// NP_001138016; /// NP_001163531; /// NP_649654; /// NP_731081;, nucleotide= NM_001144543; /// NM_001144544; /// NM_001170060; /// NM_141397; /// NM_169141;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037443.
BioGrid reports that CG1021 interacts with CG17344 .
VDRC has 3 RNAi stocks for FBgn0037443 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain464 ± 104 of 4 1.80Up
Head412 ± 224 of 4 1.60Up
Eye553 ± 314 of 4 2.14Up
Thoracicoabdominal ganglion387 ± 114 of 4 1.50Up
Salivary gland293 ± 184 of 4 1.13None
Crop300 ± 64 of 4 1.20None
Midgut272 ± 84 of 4 1.10None
Tubule183 ± 74 of 4 0.70Down
Hindgut189 ± 64 of 4 0.70Down
Heart665 ± 274 of 4 2.57Up
Fat body941 ± 304 of 4 3.63Up
Ovary401 ± 74 of 4 1.50Up
Testis76 ± 24 of 4 0.30Down
Male accessory glands332 ± 264 of 4 1.30None
Virgin spermatheca814 ± 204 of 4 3.14Up
Mated spermatheca878 ± 354 of 4 3.39Up
Adult carcass479 ± 74 of 4 1.90Up
Larval CNS315 ± 84 of 4 1.22Up
Larval Salivary gland167 ± 44 of 4 0.65Down
Larval midgut278 ± 104 of 4 1.07None
Larval tubule463 ± 264 of 4 1.80Up
Larval hindgut313 ± 344 of 4 1.21None
Larval fat body434 ± 434 of 4 1.70Up
Larval trachea193 ± 294 of 4 0.75Down
Larval carcass209 ± 104 of 4 0.81Down
S2 cells (growing)253 ± 114 of 4 0.98None
Whole fly259 ± 144 of 4

Looking for FBgn0037443. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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