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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037445 through 18771 annotations produced 1 hits



(CG9727):

Annotation Number : CG9727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037445
Gbrowse : chr3R:2277570-2282165 (-) // 100.0 //
Probeset : 1635001_at
Accessions : protein= NP_649656;, nucleotide= NM_141399;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0037445.
Homophila reports that CG9727 is a close match (3e-22) to human gene RFX5 (NP_001020774), a gene associated with Bare lymphocyte syndrome, type II, complementation group C, 209920 (3);Bare lymphocyte syndrome, type II, complementation group E, 209920 (3).
TRiP has 2 RNAi stocks for FBgn0037445 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037445 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 1.00None
Head15 ± 11 of 4 1.00None
Eye3 ± 10 of 4 0.25Down
Thoracicoabdominal ganglion11 ± 32 of 4 0.70None
Salivary gland15 ± 51 of 4 0.99None
Crop19 ± 10 of 4 1.30None
Midgut17 ± 20 of 4 1.10None
Tubule6 ± 00 of 4 0.40Down
Hindgut17 ± 01 of 4 1.10None
Heart2 ± 00 of 4 0.17Down
Fat body15 ± 51 of 4 1.01None
Ovary28 ± 14 of 4 1.80Up
Testis30 ± 34 of 4 2.00Up
Male accessory glands17 ± 30 of 4 1.20None
Virgin spermatheca3 ± 10 of 4 0.20Down
Mated spermatheca1 ± 00 of 4 0.10Down
Adult carcass25 ± 30 of 4 1.60None
Larval CNS13 ± 23 of 4 0.85None
Larval Salivary gland7 ± 21 of 4 0.49Down
Larval midgut8 ± 20 of 4 0.55None
Larval tubule22 ± 14 of 4 1.50Up
Larval hindgut10 ± 11 of 4 0.67None
Larval fat body24 ± 21 of 4 1.60Up
Larval trachea3 ± 20 of 4 0.23Down
Larval carcass10 ± 00 of 4 0.67None
S2 cells (growing)54 ± 24 of 4 3.49Up
Whole fly15 ± 21 of 4

Looking for FBgn0037445. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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