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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037461 through 18771 annotations produced 1 hits



(CG15177):

Annotation Number : CG15177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037461
Gbrowse : chr3R:2453925-2455043 (-) // 99.61 //
Probeset : 1626108_at
Accessions : protein= NP_649672;, nucleotide= NM_141415;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0037461.
BDGP gene expression has embryonic in situ data for CG15177: 4 pix of staining in 1 body parts.
BioGrid reports that CG15177 interacts with CG17903 CG2233 CG3924 CG7660 CG9917 CG3458 .
TRiP has 1 RNAi stocks for FBgn0037461 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037461 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland12 ± 51 of 4 0.17Down
Crop6 ± 20 of 4 0.10Down
Midgut4 ± 20 of 4 0.10Down
Tubule9 ± 10 of 4 0.10Down
Hindgut6 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.03Down
Fat body12 ± 42 of 4 0.17Down
Ovary2 ± 00 of 4 0.00Down
Testis1075 ± 204 of 414.50Up
Male accessory glands8 ± 00 of 4 0.10Down
Virgin spermatheca9 ± 11 of 4 0.12Down
Mated spermatheca12 ± 32 of 4 0.17Down
Adult carcass11 ± 31 of 4 0.10Down
Larval CNS6 ± 43 of 4 0.09Down
Larval Salivary gland4 ± 21 of 4 0.06Down
Larval midgut5 ± 10 of 4 0.08Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut5 ± 21 of 4 0.08Down
Larval fat body134 ± 684 of 4 1.80None
Larval trachea7 ± 81 of 4 0.10Down
Larval carcass3 ± 00 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly74 ± 54 of 4

Looking for FBgn0037461. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime