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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037464 through 18771 annotations produced 1 hits



(CG1988):

Annotation Number : CG1988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037464
Gbrowse : chr3R:2888041-2890011 (+) // 100.0 //
Probeset : 1630153_a_at
Accessions : protein= NP_001163534; /// NP_649687; /// NP_788591;, nucleotide= NM_001170063; /// NM_141430; /// NM_176414;
FlyMine data for FBgn0037464.
VDRC has 3 RNAi stocks for FBgn0037464 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head11 ± 11 of 4 0.10Down
Eye7 ± 22 of 4 0.04Down
Thoracicoabdominal ganglion11 ± 22 of 4 0.10Down
Salivary gland29 ± 43 of 4 0.15Down
Crop19 ± 42 of 4 0.10Down
Midgut12 ± 12 of 4 0.10Down
Tubule9 ± 02 of 4 0.00Down
Hindgut14 ± 12 of 4 0.10Down
Heart6 ± 00 of 4 0.04Down
Fat body13 ± 42 of 4 0.07Down
Ovary5 ± 11 of 4 0.00Down
Testis1724 ± 194 of 4 9.00Up
Male accessory glands21 ± 24 of 4 0.10Down
Virgin spermatheca12 ± 14 of 4 0.07Down
Mated spermatheca16 ± 24 of 4 0.09Down
Adult carcass19 ± 22 of 4 0.10Down
Larval CNS10 ± 23 of 4 0.05Down
Larval Salivary gland11 ± 23 of 4 0.06Down
Larval midgut16 ± 12 of 4 0.09Down
Larval tubule12 ± 13 of 4 0.10Down
Larval hindgut9 ± 03 of 4 0.05Down
Larval fat body228 ± 1384 of 4 1.20None
Larval trachea13 ± 114 of 4 0.07Down
Larval carcass12 ± 11 of 4 0.06Down
S2 cells (growing)5 ± 11 of 4 0.03Down
Whole fly190 ± 234 of 4

Looking for FBgn0037464. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime