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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037466 through 18771 annotations produced 1 hits



(CG1965):

Annotation Number : CG1965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037466
Gbrowse : chr3R:2893145-2897349 (+) // 100.0 //
Probeset : 1627693_at
Accessions : protein= NP_649689;, nucleotide= NM_141432;
Pathway : via spliceosome // inferred by curator /// 0045449 // regulation of transcription // inferred from electronic annotatio
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0071011 // precatalytic spliceosome // inferred from direc
FlyMine data for FBgn0037466.
BioGrid reports that CG1965 interacts with CG33129 .
VDRC has 3 RNAi stocks for FBgn0037466 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain405 ± 134 of 4 3.60Up
Head108 ± 24 of 4 1.00None
Eye100 ± 64 of 4 0.88None
Thoracicoabdominal ganglion279 ± 134 of 4 2.50Up
Salivary gland109 ± 34 of 4 0.96None
Crop135 ± 84 of 4 1.20None
Midgut135 ± 64 of 4 1.20Up
Tubule107 ± 54 of 4 0.90None
Hindgut121 ± 54 of 4 1.10None
Heart67 ± 54 of 4 0.59Down
Fat body92 ± 154 of 4 0.81None
Ovary212 ± 24 of 4 1.90Up
Testis41 ± 34 of 4 0.40Down
Male accessory glands167 ± 54 of 4 1.50Up
Virgin spermatheca105 ± 34 of 4 0.92None
Mated spermatheca99 ± 124 of 4 0.87None
Adult carcass111 ± 64 of 4 1.00None
Larval CNS243 ± 494 of 4 2.14Up
Larval Salivary gland116 ± 94 of 4 1.02None
Larval midgut85 ± 84 of 4 0.75Down
Larval tubule130 ± 24 of 4 1.10Up
Larval hindgut93 ± 44 of 4 0.82Down
Larval fat body152 ± 64 of 4 1.30Up
Larval trachea101 ± 114 of 4 0.89None
Larval carcass105 ± 34 of 4 0.93None
S2 cells (growing)83 ± 34 of 4 0.73Down
Whole fly113 ± 34 of 4

Looking for FBgn0037466. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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