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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037468 through 18771 annotations produced 1 hits



(CG1943):

Annotation Number : CG1943
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037468
Gbrowse : chr3R:2900558-2903509 (+) // 100.0 //
Probeset : 1623816_s_at
Accessions : protein= NP_649691; /// NP_731126; /// NP_731127;, nucleotide= NM_141434; /// NM_169166; /// NM_169167;
FlyMine data for FBgn0037468.
VDRC has 2 RNAi stocks for FBgn0037468 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain618 214 of 4 0.40Down
Head1051 404 of 4 0.70Down
Eye2754 1624 of 4 1.80Up
Thoracicoabdominal ganglion531 284 of 4 0.30Down
Salivary gland1294 734 of 4 0.85None
Crop667 274 of 4 0.40Down
Midgut899 384 of 4 0.60Down
Tubule420 504 of 4 0.30Down
Hindgut1169 214 of 4 0.80Down
Heart339 284 of 4 0.22Down
Fat body64 204 of 4 0.04Down
Ovary2075 274 of 4 1.40Up
Testis389 84 of 4 0.30Down
Male accessory glands1392 554 of 4 0.90None
Virgin spermatheca341 444 of 4 0.22Down
Mated spermatheca257 454 of 4 0.17Down
Adult carcass168 94 of 4 0.10Down
Larval CNS1459 694 of 4 0.95None
Larval Salivary gland1658 514 of 4 1.08None
Larval midgut771 1134 of 4 0.50Down
Larval tubule1893 1194 of 4 1.20Up
Larval hindgut1382 374 of 4 0.90None
Larval fat body1490 1824 of 4 1.00None
Larval trachea1967 1334 of 4 1.29Up
Larval carcass1104 1254 of 4 0.72Down
S2 cells (growing)3183 314 of 4 2.08Up
Whole fly1529 694 of 4

Looking for FBgn0037468. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime