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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037469 through 18771 annotations produced 1 hits



CG1939 (Dpck):

Annotation Number : CG1939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037469
Gbrowse : chr3R:2907910-2908973 (+) // 100.0 //
Probeset : 1639133_at
Accessions : protein= NP_649692;, nucleotide= NM_141435;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004140 // dephospho-CoA kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred f
FlyMine data for FBgn0037469.
BDGP gene expression has embryonic in situ data for CG1939: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037469 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain207 54 of 4 2.10Up
Head141 104 of 4 1.50Up
Eye301 164 of 4 3.09Up
Thoracicoabdominal ganglion280 54 of 4 2.90Up
Salivary gland84 14 of 4 0.87None
Crop153 24 of 4 1.60Up
Midgut169 64 of 4 1.70Up
Tubule158 54 of 4 1.60Up
Hindgut229 84 of 4 2.40Up
Heart141 74 of 4 1.46Up
Fat body68 44 of 4 0.70Down
Ovary157 34 of 4 1.60Up
Testis166 14 of 4 1.70Up
Male accessory glands86 94 of 4 0.90None
Virgin spermatheca99 54 of 4 1.02None
Mated spermatheca65 44 of 4 0.68Down
Adult carcass88 34 of 4 0.90None
Larval CNS179 154 of 4 1.85Up
Larval Salivary gland77 64 of 4 0.80Down
Larval midgut129 74 of 4 1.33Up
Larval tubule275 54 of 4 2.80Up
Larval hindgut115 34 of 4 1.19Up
Larval fat body261 164 of 4 2.70Up
Larval trachea113 124 of 4 1.16None
Larval carcass45 34 of 4 0.47Down
S2 cells (growing)232 154 of 4 2.39Up
Whole fly97 44 of 4

Looking for FBgn0037469. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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