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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037483 through 18771 annotations produced 1 hits



/// GA13108 (CG14609 /// DpseGA13108):

Annotation Number : CG14609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037483
Gbrowse : chr3R:3026691-3029084 (+) // 100.0 //
Probeset : 1626943_at
Accessions : protein= NP_649704;, nucleotide= NM_141447;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037483.
BDGP gene expression has embryonic in situ data for CG14609: 2 pix of staining in 1 body parts.
BioGrid reports that CG14609 interacts with CG7055 .
VDRC has 3 RNAi stocks for FBgn0037483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 00 of 4 0.30Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion16 ± 20 of 4 0.30Down
Salivary gland16 ± 30 of 4 0.26Down
Crop2 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule6 ± 10 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.01Down
Fat body18 ± 121 of 4 0.30Down
Ovary1 ± 00 of 4 0.00Down
Testis971 ± 504 of 415.60Up
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca19 ± 22 of 4 0.30Down
Mated spermatheca28 ± 82 of 4 0.45Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS36 ± 183 of 4 0.59None
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule15 ± 10 of 4 0.20Down
Larval hindgut6 ± 20 of 4 0.10Down
Larval fat body93 ± 543 of 4 1.50None
Larval trachea1 ± 00 of 4 0.02Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly62 ± 24 of 4

Looking for FBgn0037483. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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