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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037486 through 18771 annotations produced 1 hits



(CG14605):

Annotation Number : CG14605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037486
Gbrowse : chr3R:3043170-3045427 (-) // 100.0 //
Probeset : 1637271_a_at
Accessions : protein= NP_649707; /// NP_731145; /// NP_731146;, nucleotide= NM_141450; /// NM_169178; /// NM_169179;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0037486.
BDGP gene expression has embryonic in situ data for CG14605: 2 pix of staining in 1 body parts.
Homophila reports that CG14605 is a close match (9e-13) to human gene GLUT2;SLC2A2 (NP_000331), a gene associated with Fanconi-Bickel syndrome, 227810 (3);{Diabetes mellitus, noninsulin-dependent} (3).
VDRC has 2 RNAi stocks for FBgn0037486 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head4 ± 11 of 4 0.10Down
Eye3 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland14 ± 30 of 4 0.22Down
Crop8 ± 11 of 4 0.10Down
Midgut11 ± 12 of 4 0.20Down
Tubule6 ± 10 of 4 0.10Down
Hindgut8 ± 01 of 4 0.10Down
Heart4 ± 01 of 4 0.08Down
Fat body13 ± 33 of 4 0.21Down
Ovary4 ± 10 of 4 0.10Down
Testis695 ± 384 of 410.80Up
Male accessory glands7 ± 21 of 4 0.10Down
Virgin spermatheca8 ± 02 of 4 0.14Down
Mated spermatheca12 ± 13 of 4 0.20Down
Adult carcass23 ± 41 of 4 0.40Down
Larval CNS7 ± 13 of 4 0.12Down
Larval Salivary gland9 ± 21 of 4 0.15Down
Larval midgut8 ± 21 of 4 0.14Down
Larval tubule8 ± 11 of 4 0.10Down
Larval hindgut8 ± 12 of 4 0.13Down
Larval fat body68 ± 243 of 4 1.10None
Larval trachea5 ± 21 of 4 0.09Down
Larval carcass10 ± 13 of 4 0.17Down
S2 cells (growing)8 ± 00 of 4 0.14Down
Whole fly64 ± 14 of 4

Looking for FBgn0037486. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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