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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037488 through 18771 annotations produced 1 hits



(CG14607):

Annotation Number : CG14607
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037488
Gbrowse : chr3R:3068324-3069563 (+) // 100.0 //
Probeset : 1635432_at
Accessions : protein= NP_649709;, nucleotide= NM_141452;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0037488.
BioGrid reports that CG14607 interacts with CG9031 .
VDRC has 2 RNAi stocks for FBgn0037488 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.30Down
Head4 ± 10 of 4 0.60None
Eye7 ± 11 of 4 0.81None
Thoracicoabdominal ganglion1 ± 00 of 4 0.20Down
Salivary gland8 ± 30 of 4 0.94None
Crop7 ± 20 of 4 0.90None
Midgut13 ± 40 of 4 1.50None
Tubule6 ± 10 of 4 0.80Down
Hindgut3 ± 10 of 4 0.40Down
Heart4 ± 20 of 4 0.51None
Fat body5 ± 30 of 4 0.61None
Ovary3 ± 10 of 4 0.40Down
Testis4 ± 00 of 4 0.50Down
Male accessory glands5 ± 10 of 4 0.70None
Virgin spermatheca5 ± 10 of 4 0.60None
Mated spermatheca5 ± 20 of 4 0.62None
Adult carcass126 ± 84 of 414.40Up
Larval CNS3 ± 30 of 4 0.45None
Larval Salivary gland2 ± 00 of 4 0.23Down
Larval midgut13 ± 30 of 4 1.52None
Larval tubule5 ± 10 of 4 0.60None
Larval hindgut8 ± 00 of 4 0.92None
Larval fat body13 ± 21 of 4 1.60None
Larval trachea2 ± 20 of 4 0.33Down
Larval carcass8 ± 20 of 4 0.93None
S2 cells (growing)4 ± 10 of 4 0.54Down
Whole fly8 ± 00 of 4

Looking for FBgn0037488. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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