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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037489 through 18771 annotations produced 1 hits



(CG1234):

Annotation Number : CG1234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037489
Gbrowse : chr3R:3069895-3072689 (-) // 100.0 //
Probeset : 1639632_at
Accessions : protein= NP_649710;, nucleotide= NM_141453;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0037489.
BDGP gene expression has embryonic in situ data for CG1234: 12 pix of staining in 15 body parts.
BioGrid reports that CG1234 interacts with CG5359 .
TRiP has 1 RNAi stocks for FBgn0037489 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037489 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 24 of 4 0.40Down
Head70 34 of 4 0.40Down
Eye45 44 of 4 0.27Down
Thoracicoabdominal ganglion60 24 of 4 0.40Down
Salivary gland103 44 of 4 0.60Down
Crop101 34 of 4 0.60Down
Midgut89 44 of 4 0.50Down
Tubule86 104 of 4 0.50Down
Hindgut72 04 of 4 0.40Down
Heart52 54 of 4 0.31Down
Fat body86 84 of 4 0.51Down
Ovary311 44 of 4 1.80Up
Testis95 24 of 4 0.60Down
Male accessory glands212 84 of 4 1.20Up
Virgin spermatheca69 34 of 4 0.40Down
Mated spermatheca94 54 of 4 0.55Down
Adult carcass61 44 of 4 0.40Down
Larval CNS230 74 of 4 1.34Up
Larval Salivary gland148 134 of 4 0.87None
Larval midgut61 54 of 4 0.36Down
Larval tubule44 44 of 4 0.30Down
Larval hindgut115 164 of 4 0.68Down
Larval fat body51 54 of 4 0.30Down
Larval trachea157 264 of 4 0.92None
Larval carcass114 284 of 4 0.67None
S2 cells (growing)162 44 of 4 0.95None
Whole fly171 84 of 4

Looking for FBgn0037489. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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