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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037492 through 18771 annotations produced 1 hits



(CG10050):

Annotation Number : CG10050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037492
Gbrowse : chr3R:3075520-3077470 (+) // 100.0 //
Probeset : 1640965_at
Accessions : protein= NP_649713;, nucleotide= NM_141456;
FlyMine data for FBgn0037492.
BDGP gene expression has embryonic in situ data for CG10050: 12 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0037492 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 4 0.90None
Head18 ± 14 of 4 0.80None
Eye8 ± 12 of 4 0.37Down
Thoracicoabdominal ganglion25 ± 24 of 4 1.10None
Salivary gland18 ± 20 of 4 0.77None
Crop13 ± 31 of 4 0.60None
Midgut8 ± 30 of 4 0.40Down
Tubule13 ± 00 of 4 0.60Down
Hindgut7 ± 10 of 4 0.30Down
Heart4 ± 00 of 4 0.18Down
Fat body11 ± 32 of 4 0.50Down
Ovary36 ± 14 of 4 1.50Up
Testis5 ± 11 of 4 0.20Down
Male accessory glands10 ± 20 of 4 0.50Down
Virgin spermatheca6 ± 20 of 4 0.29Down
Mated spermatheca6 ± 20 of 4 0.27Down
Adult carcass9 ± 30 of 4 0.40Down
Larval CNS32 ± 34 of 4 1.37None
Larval Salivary gland15 ± 12 of 4 0.65None
Larval midgut4 ± 10 of 4 0.19Down
Larval tubule5 ± 10 of 4 0.20Down
Larval hindgut10 ± 23 of 4 0.45Down
Larval fat body9 ± 20 of 4 0.40Down
Larval trachea18 ± 34 of 4 0.79None
Larval carcass20 ± 23 of 4 0.84None
S2 cells (growing)17 ± 14 of 4 0.72None
Whole fly23 ± 34 of 4

Looking for FBgn0037492. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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