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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037493 through 18771 annotations produced 1 hits



(CG10032):

Annotation Number : CG10032
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037493
Gbrowse : chr3R:3097313-3098231 (+) // 100.0 //
Probeset : 1632096_at
Accessions : protein= NP_649714;, nucleotide= NM_141457;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037493.
BioGrid reports that CG10032 interacts with CG9467 CG9653 CG9663 CG10263 CG1034 CG10387 CG10686 CG10691 CG11094 CG11489 CG12679 CG12932 CG13159 CG13512 CG13627 CG13840 CG1391 CG14079 CG14204 CG14307 CG15032 CG15781 CG17019 CG17489 CG1759 CG1850 CG1913 CG2139 CG2924 CG3081 CG31160 CG31232 CG31775 CG3187 CG3203 CG33152 CG3642 CG3858 CG3953 CG14578 CG4216 CG4404 CG4767 CG4798 CG4821 CG4829 CG4863 CG5494 CG5885 CG5905 CG5923 CG6534 CG6707 CG7808 CG9704 CG1133 CG6246 CG17757 .
TRiP has 1 RNAi stocks for FBgn0037493 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037493 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 1.10None
Head8 ± 21 of 4 1.30None
Eye6 ± 10 of 4 1.02None
Thoracicoabdominal ganglion7 ± 22 of 4 1.10None
Salivary gland16 ± 20 of 4 2.42Up
Crop8 ± 21 of 4 1.20None
Midgut8 ± 10 of 4 1.20None
Tubule6 ± 00 of 4 1.00None
Hindgut10 ± 20 of 4 1.50None
Heart5 ± 10 of 4 0.79None
Fat body9 ± 30 of 4 1.47None
Ovary5 ± 11 of 4 0.80None
Testis4 ± 00 of 4 0.70None
Male accessory glands12 ± 10 of 4 1.90Up
Virgin spermatheca7 ± 00 of 4 1.07None
Mated spermatheca7 ± 10 of 4 1.18None
Adult carcass14 ± 20 of 4 2.20Up
Larval CNS8 ± 11 of 4 1.25None
Larval Salivary gland15 ± 31 of 4 2.31None
Larval midgut7 ± 02 of 4 1.16None
Larval tubule6 ± 20 of 4 1.00None
Larval hindgut8 ± 11 of 4 1.30None
Larval fat body8 ± 30 of 4 1.30None
Larval trachea6 ± 40 of 4 0.95None
Larval carcass10 ± 12 of 4 1.61Up
S2 cells (growing)7 ± 10 of 4 1.12None
Whole fly6 ± 00 of 4

Looking for FBgn0037493. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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