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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037498 through 18771 annotations produced 1 hits


(CG10029):

Annotation Number : CG10029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037498
Gbrowse : chr3R:3141554-3142891 (-) // 100.0 //
Probeset : 1634548_at
Accessions : protein= NP_649716;, nucleotide= NM_141459;
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0037498.
VDRC has 2 RNAi stocks for FBgn0037498 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 0.10Down
Head5 ± 10 of 4 0.10Down
Eye5 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion5 ± 01 of 4 0.10Down
Salivary gland11 ± 40 of 4 0.21Down
Crop9 ± 11 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut7 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.04Down
Fat body6 ± 20 of 4 0.12Down
Ovary4 ± 10 of 4 0.10Down
Testis7 ± 23 of 4 0.10Down
Male accessory glands4844 ± 994 of 491.10Up
Virgin spermatheca3 ± 21 of 4 0.07Down
Mated spermatheca3 ± 10 of 4 0.06Down
Adult carcass11 ± 31 of 4 0.20Down
Larval CNS3 ± 20 of 4 0.06Down
Larval Salivary gland8 ± 21 of 4 0.16Down
Larval midgut10 ± 11 of 4 0.20Down
Larval tubule6 ± 12 of 4 0.10Down
Larval hindgut7 ± 13 of 4 0.14Down
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea1 ± 00 of 4 0.03Down
Larval carcass3 ± 10 of 4 0.07Down
S2 cells (growing)4 ± 10 of 4 0.08Down
Whole fly53 ± 24 of 4

Looking for FBgn0037498. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime