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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037503 through 18771 annotations produced 1 hits



(CG14598):

Annotation Number : CG14598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037503
Gbrowse : chr3R:3265487-3267714 (+) // 100.0 //
Probeset : 1639181_at
Accessions : protein= NP_649722;, nucleotide= NM_141465;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037503.
BDGP gene expression has embryonic in situ data for CG14598: 15 pix of staining in 3 body parts.
BioGrid reports that CG14598 interacts with CG6497 .
VDRC has 3 RNAi stocks for FBgn0037503 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 0.80None
Head4 ± 11 of 4 0.70None
Eye2 ± 10 of 4 0.40None
Thoracicoabdominal ganglion2 ± 00 of 4 0.50Down
Salivary gland13 ± 41 of 4 2.13None
Crop7 ± 11 of 4 1.20None
Midgut2 ± 00 of 4 0.50Down
Tubule3 ± 10 of 4 0.60Down
Hindgut5 ± 10 of 4 0.90None
Heart1 ± 00 of 4 0.25Down
Fat body12 ± 34 of 4 2.03Up
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands34 ± 54 of 4 5.50Up
Virgin spermatheca11 ± 14 of 4 1.79Up
Mated spermatheca14 ± 33 of 4 2.20None
Adult carcass8 ± 20 of 4 1.30None
Larval CNS35 ± 94 of 4 5.56Up
Larval Salivary gland4 ± 20 of 4 0.76None
Larval midgut3 ± 10 of 4 0.51None
Larval tubule4 ± 11 of 4 0.80None
Larval hindgut11 ± 23 of 4 1.76None
Larval fat body3 ± 10 of 4 0.50None
Larval trachea13 ± 84 of 4 2.14None
Larval carcass363 ± 584 of 456.99Up
S2 cells (growing)1 ± 00 of 4 0.31Down
Whole fly6 ± 03 of 4

Looking for FBgn0037503. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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