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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037504 through 18771 annotations produced 1 hits



(CG1142):

Annotation Number : CG1142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037504
Gbrowse : chr3R:3298175-3299496 (-) // 100.0 //
Probeset : 1640066_at
Accessions : protein= NP_788592;, nucleotide= NM_176415;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037504.
BioGrid reports that CG1142 interacts with CG3303 CG14490 CG3099 CG8079 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 ± 14 of 4 1.30Up
Head93 ± 44 of 4 0.70Down
Eye85 ± 24 of 4 0.65Down
Thoracicoabdominal ganglion142 ± 44 of 4 1.10None
Salivary gland110 ± 24 of 4 0.84Down
Crop110 ± 14 of 4 0.80Down
Midgut69 ± 24 of 4 0.50Down
Tubule62 ± 44 of 4 0.50Down
Hindgut77 ± 14 of 4 0.60Down
Heart97 ± 44 of 4 0.74Down
Fat body92 ± 74 of 4 0.70Down
Ovary239 ± 24 of 4 1.80Up
Testis78 ± 34 of 4 0.60Down
Male accessory glands225 ± 64 of 4 1.70Up
Virgin spermatheca59 ± 54 of 4 0.45Down
Mated spermatheca66 ± 44 of 4 0.51Down
Adult carcass54 ± 24 of 4 0.40Down
Larval CNS434 ± 244 of 4 3.29Up
Larval Salivary gland106 ± 94 of 4 0.81None
Larval midgut63 ± 24 of 4 0.48Down
Larval tubule88 ± 24 of 4 0.70Down
Larval hindgut101 ± 54 of 4 0.77Down
Larval fat body82 ± 44 of 4 0.60Down
Larval trachea245 ± 254 of 4 1.86Up
Larval carcass105 ± 154 of 4 0.80None
S2 cells (growing)158 ± 34 of 4 1.20Up
Whole fly132 ± 64 of 4

Looking for FBgn0037504. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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