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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037514 through 18771 annotations produced 1 hits



(CG10919):

Annotation Number : CG10919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037514
Gbrowse : chr3R:3583892-3585336 (+) // 100.0 //
Probeset : 1635857_at
Accessions : protein= NP_649733;, nucleotide= NM_141476;
FlyMine data for FBgn0037514.
VDRC has 3 RNAi stocks for FBgn0037514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head5 01 of 4 0.00Down
Eye1 10 of 4 0.02Down
Thoracicoabdominal ganglion6 10 of 4 0.10Down
Salivary gland6 20 of 4 0.06Down
Crop6 20 of 4 0.10Down
Midgut4 10 of 4 0.00Down
Tubule5 00 of 4 0.10Down
Hindgut4 10 of 4 0.00Down
Heart1 10 of 4 0.02Down
Fat body5 30 of 4 0.05Down
Ovary1 00 of 4 0.00Down
Testis1072 324 of 4 9.90Up
Male accessory glands6 10 of 4 0.10Down
Virgin spermatheca6 00 of 4 0.06Down
Mated spermatheca6 10 of 4 0.06Down
Adult carcass9 20 of 4 0.10Down
Larval CNS5 20 of 4 0.05Down
Larval Salivary gland8 00 of 4 0.08Down
Larval midgut1 00 of 4 0.01Down
Larval tubule6 11 of 4 0.10Down
Larval hindgut5 10 of 4 0.05Down
Larval fat body173 874 of 4 1.60None
Larval trachea5 60 of 4 0.05Down
Larval carcass4 00 of 4 0.04Down
S2 cells (growing)3 00 of 4 0.03Down
Whole fly107 54 of 4

Looking for FBgn0037514. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime