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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037516 through 18771 annotations produced 1 hits



(CG11286):

Annotation Number : CG11286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037516
Gbrowse : chr3R:3596728-3597469 (-) // 100.0 //
Probeset : 1628734_at
Accessions : protein= NP_649735;, nucleotide= NM_141478;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037516.
BioGrid reports that CG11286 interacts with CG9578 CG1034 CG13701 CG15861 CG14534 CG2948 CG13510 CG14816 CG13806 CG5473 CG5568 CG5731 CG15218 CG31811 CG14619 CG8823 CG6521 CG4673 CG6549 CG4057 CG32169 CG4244 CG3093 CG15822 .
TRiP has 1 RNAi stocks for FBgn0037516 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037516 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head9 ± 00 of 4 0.30Down
Eye2 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion8 ± 01 of 4 0.20Down
Salivary gland13 ± 10 of 4 0.37Down
Crop11 ± 10 of 4 0.30Down
Midgut7 ± 00 of 4 0.20Down
Tubule7 ± 00 of 4 0.20Down
Hindgut6 ± 10 of 4 0.20Down
Heart3 ± 00 of 4 0.09Down
Fat body10 ± 12 of 4 0.30Down
Ovary6 ± 03 of 4 0.20Down
Testis318 ± 144 of 4 8.90Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.19Down
Mated spermatheca5 ± 10 of 4 0.16Down
Adult carcass9 ± 21 of 4 0.30Down
Larval CNS4 ± 12 of 4 0.12Down
Larval Salivary gland2 ± 00 of 4 0.07Down
Larval midgut8 ± 20 of 4 0.22Down
Larval tubule8 ± 20 of 4 0.20Down
Larval hindgut5 ± 00 of 4 0.16Down
Larval fat body37 ± 124 of 4 1.10None
Larval trachea2 ± 10 of 4 0.07Down
Larval carcass7 ± 00 of 4 0.21Down
S2 cells (growing)4 ± 10 of 4 0.13Down
Whole fly35 ± 44 of 4

Looking for FBgn0037516. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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