FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037517 through 18771 annotations produced 1 hits

(CG10086):

Annotation Number : CG10086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037517
Gbrowse : chr3R:3616362-3619221 (+) // 100.0 //
Probeset : 1636398_at
Accessions : protein= NP_649736;, nucleotide= NM_141479;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037517.
BDGP gene expression has embryonic in situ data for CG10086: 11 pix of staining in 3 body parts.
BioGrid reports that CG10086 interacts with CG10918 CG5546 CG7180 CG8367 CG6720 CG7552 .
VDRC has 2 RNAi stocks for FBgn0037517 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	0.10	Down
Head	7 ± 0	0 of 4	0.10	Down
Eye	3 ± 1	0 of 4	0.04	Down
Thoracicoabdominal ganglion	6 ± 1	0 of 4	0.10	Down
Salivary gland	11 ± 3	1 of 4	0.14	Down
Crop	10 ± 2	2 of 4	0.10	Down
Midgut	669 ± 9	4 of 4	8.20	Up
Tubule	1269 ± 50	4 of 4	15.50	Up
Hindgut	237 ± 11	4 of 4	2.90	Up
Heart	10 ± 3	2 of 4	0.13	Down
Fat body	19 ± 7	4 of 4	0.24	Down
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	81 ± 6	4 of 4	1.00	None
Male accessory glands	7 ± 1	0 of 4	0.10	Down
Virgin spermatheca	15 ± 1	4 of 4	0.19	Down
Mated spermatheca	20 ± 3	3 of 4	0.25	Down
Adult carcass	10 ± 1	1 of 4	0.10	Down
Larval CNS	7 ± 1	1 of 4	0.09	Down
Larval Salivary gland	10 ± 2	2 of 4	0.13	Down
Larval midgut	578 ± 24	4 of 4	7.09	Up
Larval tubule	1425 ± 46	4 of 4	17.50	Up
Larval hindgut	323 ± 13	4 of 4	3.96	Up
Larval fat body	18 ± 5	2 of 4	0.20	Down
Larval trachea	6 ± 1	1 of 4	0.08	Down
Larval carcass	5 ± 1	0 of 4	0.07	Down
S2 cells (growing)	3 ± 0	0 of 4	0.04	Down
Whole fly	81 ± 6	4 of 4

Looking for FBgn0037517. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720