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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037519 through 18771 annotations produced 2 hits



(CG3014):

Annotation Number : CG3014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037519
Gbrowse : chr3R:3625327-3627751 (-) // 100.0 //
Probeset : 1631193_at
Accessions : protein= NP_001138022; /// NP_649738;, nucleotide= NM_001144550; /// NM_141481;
FlyMine data for FBgn0037519.
BioGrid reports that CG3014 interacts with CG4700 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 12 of 4 0.60None
Head5 ± 20 of 4 0.50None
Eye2 ± 10 of 4 0.25Down
Thoracicoabdominal ganglion44 ± 14 of 4 4.00Up
Salivary gland10 ± 20 of 4 0.90None
Crop7 ± 10 of 4 0.60None
Midgut4 ± 10 of 4 0.40Down
Tubule170 ± 114 of 415.40Up
Hindgut5 ± 10 of 4 0.50Down
Heart1 ± 00 of 4 0.14Down
Fat body2 ± 10 of 4 0.22Down
Ovary10 ± 13 of 4 1.00None
Testis21 ± 24 of 4 2.00Up
Male accessory glands6 ± 20 of 4 0.60None
Virgin spermatheca18 ± 21 of 4 1.65Up
Mated spermatheca21 ± 11 of 4 1.94Up
Adult carcass10 ± 10 of 4 1.00None
Larval CNS26 ± 04 of 4 2.38Up
Larval Salivary gland2 ± 00 of 4 0.20Down
Larval midgut5 ± 20 of 4 0.46None
Larval tubule43 ± 64 of 4 3.90Up
Larval hindgut2 ± 10 of 4 0.26Down
Larval fat body4 ± 20 of 4 0.40Down
Larval trachea4 ± 30 of 4 0.37Down
Larval carcass3 ± 10 of 4 0.36Down
S2 cells (growing)11 ± 11 of 4 1.00None
Whole fly11 ± 14 of 4



/// (CG18268 /// CG3014):

Annotation Number : CG18268
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037519 /// FBgn0037520
Gbrowse : chr3R:3628751-3629998 (-) // 100.0 //
Probeset : 1631581_at
Accessions : protein= NP_001138022; /// NP_649738; /// NP_649739;, nucleotide= NM_001144550; /// NM_141481; /// NM_141482;
FlyMine data for FBgn0037519 /// FBgn0037520.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head7 ± 03 of 4 0.30Down
Eye2 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.18Down
Crop2 ± 10 of 4 0.10Down
Midgut12 ± 14 of 4 0.50None
Tubule606 ± 464 of 424.00Up
Hindgut7 ± 13 of 4 0.30Down
Heart0 ± 00 of 4 0.03Down
Fat body1 ± 10 of 4 0.04Down
Ovary16 ± 14 of 4 0.60None
Testis139 ± 84 of 4 5.50Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca103 ± 74 of 4 4.09Up
Mated spermatheca119 ± 124 of 4 4.71Up
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.14Down
Larval Salivary gland1 ± 00 of 4 0.06Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule142 ± 114 of 4 5.70Up
Larval hindgut2 ± 21 of 4 0.11Down
Larval fat body3 ± 20 of 4 0.20Down
Larval trachea1 ± 10 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly25 ± 44 of 4

Looking for FBgn0037519. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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