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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037521 through 18771 annotations produced 1 hits



(CG2993):

Annotation Number : CG2993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037521
Gbrowse : chr3R:3631716-3635710 (-) // 100.0 //
Probeset : 1638016_at
Accessions : protein= NP_649740;, nucleotide= NM_141483;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0037521.
BDGP gene expression has embryonic in situ data for CG2993: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037521 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 ± 114 of 420.00Up
Head18 ± 34 of 4 1.80None
Eye9 ± 04 of 4 0.93None
Thoracicoabdominal ganglion111 ± 284 of 411.00Up
Salivary gland19 ± 33 of 4 1.92None
Crop10 ± 22 of 4 1.00None
Midgut2 ± 10 of 4 0.20Down
Tubule17 ± 03 of 4 1.70Up
Hindgut5 ± 10 of 4 0.50None
Heart4 ± 21 of 4 0.42None
Fat body14 ± 34 of 4 1.38None
Ovary8 ± 14 of 4 0.80None
Testis3 ± 00 of 4 0.40Down
Male accessory glands9 ± 21 of 4 0.90None
Virgin spermatheca7 ± 00 of 4 0.74None
Mated spermatheca6 ± 11 of 4 0.59None
Adult carcass5 ± 10 of 4 0.50None
Larval CNS46 ± 134 of 4 4.54Up
Larval Salivary gland3 ± 10 of 4 0.34Down
Larval midgut2 ± 10 of 4 0.28Down
Larval tubule7 ± 23 of 4 0.70None
Larval hindgut4 ± 11 of 4 0.45Down
Larval fat body3 ± 10 of 4 0.40Down
Larval trachea4 ± 00 of 4 0.40Down
Larval carcass2 ± 00 of 4 0.20Down
S2 cells (growing)1 ± 00 of 4 0.16Down
Whole fly10 ± 04 of 4

Looking for FBgn0037521. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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