FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037534 through 18771 annotations produced 1 hits

chr3R:3807538-3821568 (-) // 100.0 // ():

Annotation Number : CG2781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634016_at
Accessions : protein= , nucleotide= NP_649754;
Pathway : 0030497 // fatty acid elongation // inferred from sequence or structural similarity /// 0042761 // very long-chain fatty
Interpro : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for full length.
Homophila reports that CG2781 is a close match (5e-52) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	4 of 4	0.00	Down
Head	1003 ± 79	4 of 4	2.40	Up
Eye	330 ± 30	4 of 4	0.79	None
Thoracicoabdominal ganglion	16 ± 1	4 of 4	0.00	Down
Salivary gland	13 ± 6	1 of 4	0.03	Down
Crop	3840 ± 157	4 of 4	9.10	Up
Midgut	249 ± 7	4 of 4	0.60	Down
Tubule	162 ± 4	4 of 4	0.40	Down
Hindgut	3458 ± 39	4 of 4	8.20	Up
Heart	472 ± 58	4 of 4	1.12	None
Fat body	668 ± 214	4 of 4	1.59	None
Ovary	120 ± 14	4 of 4	0.30	Down
Testis	12 ± 1	4 of 4	0.00	Down
Male accessory glands	18 ± 4	3 of 4	0.00	Down
Virgin spermatheca	13 ± 1	3 of 4	0.03	Down
Mated spermatheca	20 ± 1	4 of 4	0.05	Down
Adult carcass	1189 ± 11	4 of 4	2.80	Up
Larval CNS	20 ± 5	4 of 4	0.05	Down
Larval Salivary gland	3 ± 1	1 of 4	0.01	Down
Larval midgut	89 ± 5	4 of 4	0.21	Down
Larval tubule	67 ± 3	4 of 4	0.20	Down
Larval hindgut	270 ± 14	4 of 4	0.64	Down
Larval fat body	5 ± 0	0 of 4	0.00	Down
Larval trachea	236 ± 74	4 of 4	0.56	Down
Larval carcass	1325 ± 109	4 of 4	3.15	Up
S2 cells (growing)	2 ± 0	0 of 4	0.01	Down
Whole fly	421 ± 33	4 of 4

Looking for FBgn0037534. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720