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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037535 through 18771 annotations produced 1 hits


Annotation Number : CG14463
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037535
Gbrowse : chr3R:3825766-3826574 (+) // 100.0 //
Probeset : 1640424_at
Accessions : protein= NP_649755;, nucleotide= NM_141498;
FlyMine data for FBgn0037535.
VDRC has 2 RNAi stocks for FBgn0037535 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 34 of 4 1.10Up
Head57 34 of 4 0.70Down
Eye70 54 of 4 0.82Down
Thoracicoabdominal ganglion78 44 of 4 0.90None
Salivary gland63 04 of 4 0.73Down
Crop46 34 of 4 0.50Down
Midgut119 24 of 4 1.40Up
Tubule47 24 of 4 0.60Down
Hindgut56 34 of 4 0.70Down
Heart55 34 of 4 0.64Down
Fat body25 53 of 4 0.29Down
Ovary130 34 of 4 1.50Up
Testis55 44 of 4 0.60Down
Male accessory glands93 84 of 4 1.10None
Virgin spermatheca27 24 of 4 0.32Down
Mated spermatheca22 14 of 4 0.26Down
Adult carcass35 34 of 4 0.40Down
Larval CNS64 44 of 4 0.75Down
Larval Salivary gland54 34 of 4 0.63Down
Larval midgut119 54 of 4 1.39Up
Larval tubule80 24 of 4 0.90None
Larval hindgut65 04 of 4 0.76Down
Larval fat body50 24 of 4 0.60Down
Larval trachea83 94 of 4 0.97None
Larval carcass31 14 of 4 0.37Down
S2 cells (growing)93 14 of 4 1.09None
Whole fly86 24 of 4

Looking for FBgn0037535. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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