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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037536 through 18771 annotations produced 1 hits



(CG2698):

Annotation Number : CG2698
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037536
Gbrowse : chr3R:3827305-3831432 (+) // 100.0 //
Probeset : 1630981_at
Accessions : protein= NP_001138024; /// NP_649756;, nucleotide= NM_001144552; /// NM_141499;
FlyMine data for FBgn0037536.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain589 ± 124 of 4 1.90Up
Head521 ± 294 of 4 1.70Up
Eye955 ± 134 of 4 3.04Up
Thoracicoabdominal ganglion588 ± 74 of 4 1.90Up
Salivary gland244 ± 194 of 4 0.78None
Crop453 ± 124 of 4 1.40Up
Midgut128 ± 54 of 4 0.40Down
Tubule180 ± 24 of 4 0.60Down
Hindgut256 ± 94 of 4 0.80None
Heart423 ± 124 of 4 1.35Up
Fat body465 ± 474 of 4 1.48Up
Ovary524 ± 74 of 4 1.70Up
Testis359 ± 24 of 4 1.10None
Male accessory glands290 ± 84 of 4 0.90None
Virgin spermatheca576 ± 244 of 4 1.84Up
Mated spermatheca682 ± 254 of 4 2.17Up
Adult carcass381 ± 154 of 4 1.20None
Larval CNS370 ± 294 of 4 1.18None
Larval Salivary gland205 ± 64 of 4 0.66Down
Larval midgut140 ± 64 of 4 0.45Down
Larval tubule129 ± 34 of 4 0.40Down
Larval hindgut262 ± 124 of 4 0.83None
Larval fat body434 ± 364 of 4 1.40Up
Larval trachea860 ± 1244 of 4 2.74Up
Larval carcass470 ± 84 of 4 1.50Up
S2 cells (growing)543 ± 34 of 4 1.73Up
Whole fly313 ± 294 of 4

Looking for FBgn0037536. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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