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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037538 through 18771 annotations produced 1 hits



(CG3223):

Annotation Number : CG3223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037538
Gbrowse : chr3R:3835092-3836740 (+) // 100.0 //
Probeset : 1632568_at
Accessions : protein= NP_649758;, nucleotide= NM_141501;
FlyMine data for FBgn0037538.
BDGP gene expression has embryonic in situ data for CG3223: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 ± 44 of 4 0.80Down
Head87 ± 44 of 4 0.80Down
Eye87 ± 54 of 4 0.81Down
Thoracicoabdominal ganglion86 ± 34 of 4 0.80Down
Salivary gland65 ± 74 of 4 0.61Down
Crop99 ± 14 of 4 0.90None
Midgut77 ± 44 of 4 0.70Down
Tubule65 ± 34 of 4 0.60Down
Hindgut82 ± 34 of 4 0.80Down
Heart127 ± 44 of 4 1.19Up
Fat body128 ± 104 of 4 1.19Up
Ovary181 ± 34 of 4 1.70Up
Testis272 ± 114 of 4 2.50Up
Male accessory glands112 ± 44 of 4 1.00None
Virgin spermatheca91 ± 44 of 4 0.84Down
Mated spermatheca97 ± 74 of 4 0.91None
Adult carcass126 ± 64 of 4 1.20None
Larval CNS226 ± 294 of 4 2.10Up
Larval Salivary gland110 ± 64 of 4 1.03None
Larval midgut169 ± 394 of 4 1.57None
Larval tubule291 ± 144 of 4 2.70Up
Larval hindgut139 ± 184 of 4 1.29None
Larval fat body317 ± 304 of 4 2.90Up
Larval trachea108 ± 94 of 4 1.01None
Larval carcass379 ± 934 of 4 3.52None
S2 cells (growing)145 ± 24 of 4 1.35Up
Whole fly107 ± 44 of 4

Looking for FBgn0037538. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime