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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037539 through 18771 annotations produced 1 hits



(CG10435):

Annotation Number : CG10435
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037539
Gbrowse : chr3R:3836630-3838920 (-) // 100.0 //
Probeset : 1623673_at
Accessions : protein= NP_649759;, nucleotide= NM_141502;
FlyMine data for FBgn0037539.
BioGrid reports that CG10435 interacts with CG1894 CG4276 .
VDRC has 3 RNAi stocks for FBgn0037539 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 ± 14 of 4 1.20Up
Head63 ± 44 of 4 0.80None
Eye82 ± 44 of 4 1.07None
Thoracicoabdominal ganglion78 ± 24 of 4 1.00None
Salivary gland110 ± 74 of 4 1.42Up
Crop62 ± 44 of 4 0.80Down
Midgut62 ± 14 of 4 0.80Down
Tubule94 ± 34 of 4 1.20Up
Hindgut73 ± 24 of 4 1.00None
Heart45 ± 24 of 4 0.59Down
Fat body46 ± 44 of 4 0.60Down
Ovary161 ± 24 of 4 2.10Up
Testis41 ± 14 of 4 0.50Down
Male accessory glands74 ± 54 of 4 1.00None
Virgin spermatheca62 ± 24 of 4 0.81Down
Mated spermatheca55 ± 34 of 4 0.72Down
Adult carcass40 ± 44 of 4 0.50Down
Larval CNS80 ± 54 of 4 1.04None
Larval Salivary gland76 ± 24 of 4 0.99None
Larval midgut65 ± 34 of 4 0.85None
Larval tubule131 ± 54 of 4 1.70Up
Larval hindgut71 ± 34 of 4 0.92None
Larval fat body69 ± 74 of 4 0.90None
Larval trachea66 ± 44 of 4 0.86Down
Larval carcass49 ± 44 of 4 0.64Down
S2 cells (growing)107 ± 04 of 4 1.39Up
Whole fly77 ± 34 of 4

Looking for FBgn0037539. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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