Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037540 through 18771 annotations produced 1 hits



CG2702 (Pbp95):

Annotation Number : CG2702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037540
Gbrowse : chr3R:3839545-3842330 (+) // 100.0 //
Probeset : 1626115_at
Accessions : protein= NP_649760;, nucleotide= NM_141503;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0019185 // snRNA-activating protein complex // inferred fr
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /
FlyMine data for FBgn0037540.
BDGP gene expression has embryonic in situ data for CG2702: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037540 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 24 of 4 0.90None
Head23 ± 24 of 4 0.40Down
Eye24 ± 14 of 4 0.44Down
Thoracicoabdominal ganglion61 ± 34 of 4 1.10None
Salivary gland38 ± 64 of 4 0.69None
Crop53 ± 24 of 4 0.90None
Midgut30 ± 24 of 4 0.50Down
Tubule29 ± 04 of 4 0.50Down
Hindgut37 ± 24 of 4 0.70Down
Heart21 ± 14 of 4 0.38Down
Fat body42 ± 134 of 4 0.75None
Ovary173 ± 34 of 4 3.10Up
Testis8 ± 13 of 4 0.10Down
Male accessory glands24 ± 13 of 4 0.40Down
Virgin spermatheca40 ± 44 of 4 0.73None
Mated spermatheca49 ± 14 of 4 0.88None
Adult carcass20 ± 21 of 4 0.40Down
Larval CNS95 ± 114 of 4 1.69Up
Larval Salivary gland37 ± 24 of 4 0.66Down
Larval midgut26 ± 34 of 4 0.47Down
Larval tubule31 ± 24 of 4 0.60Down
Larval hindgut42 ± 14 of 4 0.76None
Larval fat body23 ± 24 of 4 0.40Down
Larval trachea41 ± 104 of 4 0.73None
Larval carcass36 ± 54 of 4 0.65Down
S2 cells (growing)26 ± 14 of 4 0.48Down
Whole fly56 ± 54 of 4

Looking for FBgn0037540. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime