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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037547 through 18771 annotations produced 1 hits


/// (CG7910 /// DsecCG7910):

Annotation Number : CG7910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037547
Gbrowse : chr3R:3912973-3915290 (+) // 100.0 //
Probeset : 1633357_at
Accessions : protein= NP_649765;, nucleotide= NM_141508;
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electr
FlyMine data for FBgn0037547.
BDGP gene expression has embryonic in situ data for CG7910: 4 pix of staining in 1 body parts.
Homophila reports that CG7910 is a close match (1e-12) to human gene FAAH (NP_001432), a gene associated with {Drug addiction, susceptibility to} (3).
VDRC has 1 RNAi stocks for FBgn0037547 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion29 ± 281 of 4 0.00Down
Salivary gland12 ± 30 of 4 0.02Down
Crop8 ± 30 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule60 ± 350 of 4 0.10Down
Hindgut113 ± 64 of 4 0.10Down
Heart4823 ± 2134 of 4 5.96Up
Fat body4709 ± 6144 of 4 5.82Up
Ovary7 ± 00 of 4 0.00Down
Testis294 ± 104 of 4 0.40Down
Male accessory glands7 ± 30 of 4 0.00Down
Virgin spermatheca4 ± 00 of 4 0.01Down
Mated spermatheca6 ± 30 of 4 0.01Down
Adult carcass4175 ± 814 of 4 5.20Up
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland3 ± 00 of 4 0.00Down
Larval midgut3 ± 00 of 4 0.00Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut8 ± 10 of 4 0.01Down
Larval fat body20 ± 101 of 4 0.00Down
Larval trachea3 ± 41 of 4 0.00Down
Larval carcass168 ± 144 of 4 0.21Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly809 ± 284 of 4

Looking for FBgn0037547. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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