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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037548 through 18771 annotations produced 1 hits



(CG7900):

Annotation Number : CG7900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037548
Gbrowse : chr3R:3925745-3927530 (+) // 100.0 //
Probeset : 1623486_at
Accessions : protein= NP_001097707;, nucleotide= NM_001104237;
Interpro : "0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity
FlyMine data for FBgn0037548.
Homophila reports that CG7900 is a close match (4e-14) to human gene FAAH (NP_001432), a gene associated with {Drug addiction, susceptibility to} (3).
VDRC has 3 RNAi stocks for FBgn0037548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10Down
Head215 ± 114 of 4 2.30Up
Eye58 ± 94 of 4 0.62Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.10Down
Salivary gland73 ± 52 of 4 0.78Down
Crop328 ± 94 of 4 3.50Up
Midgut241 ± 104 of 4 2.60Up
Tubule437 ± 444 of 4 4.70Up
Hindgut668 ± 364 of 4 7.10Up
Heart314 ± 164 of 4 3.35Up
Fat body303 ± 294 of 4 3.24Up
Ovary29 ± 14 of 4 0.30Down
Testis15 ± 14 of 4 0.20Down
Male accessory glands54 ± 34 of 4 0.60Down
Virgin spermatheca177 ± 44 of 4 1.89Up
Mated spermatheca178 ± 74 of 4 1.90Up
Adult carcass235 ± 54 of 4 2.50Up
Larval CNS36 ± 94 of 4 0.39Down
Larval Salivary gland58 ± 74 of 4 0.63Down
Larval midgut316 ± 94 of 4 3.38Up
Larval tubule32 ± 14 of 4 0.30Down
Larval hindgut99 ± 64 of 4 1.07None
Larval fat body129 ± 114 of 4 1.40None
Larval trachea364 ± 364 of 4 3.89Up
Larval carcass131 ± 54 of 4 1.40Up
S2 cells (growing)35 ± 14 of 4 0.38Down
Whole fly93 ± 54 of 4

Looking for FBgn0037548. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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