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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037549 through 18771 annotations produced 1 hits



(CG7878):

Annotation Number : CG7878
Flybase ID : FBgn0037549
Gbrowse : chr3R:3948420-3950997 (+) // 100.0 //
Probeset : 1639665_at
Accessions : protein= NP_649767;, nucleotide= NM_141510;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0037549.
BDGP gene expression has embryonic in situ data for CG7878: 13 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0037549 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037549 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 54 of 4 0.90None
Head114 104 of 4 0.80None
Eye82 44 of 4 0.61Down
Thoracicoabdominal ganglion128 64 of 4 0.90None
Salivary gland136 74 of 4 1.01None
Crop102 34 of 4 0.80Down
Midgut117 54 of 4 0.90None
Tubule185 44 of 4 1.40Up
Hindgut132 44 of 4 1.00None
Heart84 54 of 4 0.62Down
Fat body122 194 of 4 0.91None
Ovary265 44 of 4 2.00Up
Testis164 54 of 4 1.20Up
Male accessory glands237 54 of 4 1.80Up
Virgin spermatheca125 134 of 4 0.93None
Mated spermatheca154 54 of 4 1.13None
Adult carcass97 64 of 4 0.70Down
Larval CNS222 224 of 4 1.64Up
Larval Salivary gland180 144 of 4 1.33Up
Larval midgut80 34 of 4 0.59Down
Larval tubule173 124 of 4 1.30Up
Larval hindgut120 104 of 4 0.89None
Larval fat body99 34 of 4 0.70Down
Larval trachea136 284 of 4 1.00None
Larval carcass130 104 of 4 0.96None
S2 cells (growing)532 184 of 4 3.92Up
Whole fly135 64 of 4

Looking for FBgn0037549. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime