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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037550 through 18771 annotations produced 1 hits



(CG9667):

Annotation Number : CG9667
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037550
Gbrowse : chr3R:3951010-3952055 (-) // 100.0 //
Probeset : 1638190_at
Accessions : protein= NP_649768;, nucleotide= NM_141511;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0037550.
BDGP gene expression has embryonic in situ data for CG9667: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037550 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 24 of 4 1.20Up
Head47 24 of 4 0.80Down
Eye56 44 of 4 0.98None
Thoracicoabdominal ganglion68 34 of 4 1.20None
Salivary gland56 64 of 4 0.98None
Crop58 54 of 4 1.00None
Midgut51 44 of 4 0.90None
Tubule52 53 of 4 0.90None
Hindgut46 14 of 4 0.80Down
Heart50 14 of 4 0.87None
Fat body62 64 of 4 1.07None
Ovary105 14 of 4 1.80Up
Testis22 14 of 4 0.40Down
Male accessory glands58 34 of 4 1.00None
Virgin spermatheca64 24 of 4 1.12None
Mated spermatheca80 14 of 4 1.39Up
Adult carcass49 34 of 4 0.90None
Larval CNS155 84 of 4 2.69Up
Larval Salivary gland89 14 of 4 1.54Up
Larval midgut39 14 of 4 0.68Down
Larval tubule61 24 of 4 1.10None
Larval hindgut52 34 of 4 0.91None
Larval fat body53 44 of 4 0.90None
Larval trachea75 74 of 4 1.30Up
Larval carcass66 34 of 4 1.14None
S2 cells (growing)59 34 of 4 1.03None
Whole fly58 24 of 4

Looking for FBgn0037550. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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