FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037552 through 18771 annotations produced 1 hits

(CG7800):

Annotation Number : CG7800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037552
Gbrowse : chr3R:4043699-4045468 (+) // 100.0 //
Probeset : 1638964_at
Accessions : protein= NP_649770;, nucleotide= NM_141513;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037552.
Homophila reports that CG7800 is a close match (8e-11) to human gene GREAT;LGR8 (NP_570718), a gene associated with Cryptorchidism, bilateral, 219050 (3).
BioGrid reports that CG7800 interacts with CG9809 .
TRiP has 1 RNAi stocks for FBgn0037552 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037552 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	82 ± 2	4 of 4	1.00	None
Head	195 ± 11	4 of 4	2.40	Up
Eye	153 ± 11	4 of 4	1.90	Up
Thoracicoabdominal ganglion	110 ± 3	4 of 4	1.40	Up
Salivary gland	62 ± 6	4 of 4	0.77	None
Crop	132 ± 4	4 of 4	1.60	Up
Midgut	33 ± 2	4 of 4	0.40	Down
Tubule	101 ± 8	4 of 4	1.30	Up
Hindgut	65 ± 1	4 of 4	0.80	None
Heart	506 ± 27	4 of 4	6.26	Up
Fat body	448 ± 33	4 of 4	5.54	Up
Ovary	84 ± 4	4 of 4	1.00	None
Testis	73 ± 2	4 of 4	0.90	None
Male accessory glands	93 ± 4	4 of 4	1.20	None
Virgin spermatheca	400 ± 8	4 of 4	4.95	Up
Mated spermatheca	512 ± 23	4 of 4	6.34	Up
Adult carcass	222 ± 17	4 of 4	2.80	Up
Larval CNS	170 ± 27	4 of 4	2.11	Up
Larval Salivary gland	207 ± 8	4 of 4	2.56	Up
Larval midgut	42 ± 1	4 of 4	0.53	Down
Larval tubule	242 ± 10	4 of 4	3.00	Up
Larval hindgut	91 ± 4	4 of 4	1.13	None
Larval fat body	447 ± 22	4 of 4	5.50	Up
Larval trachea	228 ± 2	4 of 4	2.83	Up
Larval carcass	146 ± 7	4 of 4	1.81	Up
S2 cells (growing)	1439 ± 26	4 of 4	17.78	Up
Whole fly	80 ± 6	4 of 4

Looking for FBgn0037552. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720