Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037553 through 18771 annotations produced 1 hits



(CG18249):

Annotation Number : CG18249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037553
Gbrowse : chr3R:4045890-4047889 (+) // 100.0 //
Probeset : 1628268_at
Accessions : protein= NP_001163549; /// NP_649771;, nucleotide= NM_001170078; /// NM_141514;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0037553.
Homophila reports that CG18249 is a close match (6e-11) to human gene SLEB1;TIL3;TLR5 (NP_003259), a gene associated with {Legionaire disease, susceptibility to}, 608556 (3);{Systemic lupus erythematosus, resistance to}, 601744 (3);{Systemic lupus erythematosus, susceptibility to, 1}, 601744 (2).
TRiP has 1 RNAi stocks for FBgn0037553 available for purchase.
VDRC has 9 RNAi stocks for FBgn0037553 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.50Down
Head142 ± 204 of 4 4.30Up
Eye66 ± 154 of 4 2.00None
Thoracicoabdominal ganglion23 ± 14 of 4 0.70Down
Salivary gland23 ± 50 of 4 0.72None
Crop11 ± 10 of 4 0.40Down
Midgut11 ± 20 of 4 0.40Down
Tubule81 ± 74 of 4 2.40Up
Hindgut24 ± 14 of 4 0.70Down
Heart589 ± 434 of 417.76Up
Fat body427 ± 374 of 412.86Up
Ovary5 ± 00 of 4 0.20Down
Testis5 ± 11 of 4 0.20Down
Male accessory glands12 ± 10 of 4 0.40Down
Virgin spermatheca777 ± 144 of 423.43Up
Mated spermatheca531 ± 574 of 416.01Up
Adult carcass253 ± 64 of 4 7.60Up
Larval CNS2 ± 10 of 4 0.08Down
Larval Salivary gland9 ± 10 of 4 0.28Down
Larval midgut11 ± 11 of 4 0.34Down
Larval tubule30 ± 44 of 4 0.90None
Larval hindgut11 ± 11 of 4 0.35Down
Larval fat body646 ± 964 of 419.50Up
Larval trachea7 ± 12 of 4 0.23Down
Larval carcass22 ± 21 of 4 0.67Down
S2 cells (growing)69 ± 54 of 4 2.09Up
Whole fly33 ± 04 of 4

Looking for FBgn0037553. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime